graphify: `graphify claude install` (install-plugins.sh STEP graphify)
writes SKILL.md, references/ and .graphify_version straight into the repo,
because ~/.claude/skills is a symlink to skills/. Every `pipx upgrade
graphifyy` therefore dirtied the tree and cost a `chore(graphify): sync
vendored skill X -> Y` commit. Now gitignored and untracked; a fresh clone
gets them back from `make plugin`. test-prompts.json is hand-written for
darwin and stays tracked. The accepted trade-off, documented in CLAUDE.md,
is that an upstream release can change the skill's prompt with no diff to
review.
settings.local.json (gitignored, so not in this commit) went from 14.6 KB
to 6.2 KB. It was a near-complete shadow copy of the global settings at a
higher precedence tier, which hid its own drift until the global moved.
Two entries were actively defeating BDR-090, merged an hour earlier:
- local `deny` still carried rsync / kill -9 / killall / pkill, the four
rules deliberately moved out of global deny. deny wins across sources,
so autoMode.soft_deny was a dead letter in this repo.
- local `allow` carried `sed *`, `cp *` and `python3 -`. An allow rule
short-circuits the classifier, punching a hole through the same
soft_deny rules.
deny and ask are dropped whole (102 and 27 of their entries duplicated the
global; ask gates nothing under defaultMode auto). allow went 185 -> 98:
81 duplicates plus six policy conflicts, the three above and
Read(//home/bchanot/**), WebSearch, and a leftover command-injection test
payload that had been allowlisted verbatim. Every non-permissions key was
a verbatim copy of the global, including a hooks block whose only original
entry pointed at hooks/config-protection.sh, a script that exists nowhere.
Upstream skill refresh, present in the working tree before this session —
committed here rather than left dangling. Not authored work.
- uv invocation fix: `uv tool run graphifyy python` -> `uv tool run --from
graphifyy python`. Without --from, uv resolved the command name against
the package instead of running the interpreter.
- default output is now HTML viz; --obsidian opts into the vault.
- description reworded to trigger on codebase questions generally, not
only when graphify-out/ already exists.
Generator-owned files updated by the out-of-band 'make plugin' run
(SKILL.md, extraction-spec, query reference, version marker). Committed
deliberately after diff review; CHANGELOG Unreleased notes the bump.
Bump 0.8.13 -> 0.8.45. Extract the SKILL.md monolith (~530 lines) into
references/ for progressive disclosure: github-and-merge, transcribe,
extraction-spec, exports, update, query, add-watch, hooks. SKILL.md now
points to each reference and loads it only on the path that needs it.
Inline fixes carried by the new version: empty-extraction guard before
any write (#1392), shrink-guard ordering so GRAPH_REPORT/analysis never
describe a graph.json that was refused (#479), root= relativization for
build/manifest parity across clones (#1361/#1417), stale-cache cleanup
and code-only semantic pre-write (#1392), edge-direction preserving
merge (#801). Adds FalkorDB export (--falkordb/--falkordb-push) and
rewrites the frontmatter description (drops the obsolete trigger: field).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_0169vjUD1sP9Nx4ZiCa8wvAw
Major SKILL.md rewrite:
- Fast path: skip extraction when graph exists and user asks a question
- Gemini backend replaces Kimi as default external LLM
- All file I/O uses ensure_ascii=False + encoding="utf-8"
- Monorepo support via per-subfolder extraction + merge
- Obsidian/HTML export via CLI instead of inline Python
- Node ID format includes parent dir to prevent ghost duplicates
- file_type gains "concept" as valid value
- Subagent chunk paths must be absolute
- --help flag prints usage and stops
- Large corpus gate raised from 200 to 500 files
Bumps gstack submodule to 026751e.
Co-Authored-By: Claude <noreply@anthropic.com>
Skills covered: close, graphify, harden, profile, prune-memory.
Used by /darwin-skill dim 8 effect testing.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- GitHub URL clone support (single + multi-repo merge)
- uv tool detection ahead of pipx shebang
- Optional Kimi K2.6 backend via MOONSHOT_API_KEY
- Discrete confidence rubric (0.55/0.65/0.75/0.85/0.95) replaces continuous range
- Aggregated community view for graphs >5000 nodes
- Manifest persistence after --update so next run diffs against current state
- Video file support, rationale-as-attribute (not separate node)
Co-Authored-By: Claude <noreply@anthropic.com>
Auto-upgraded during /graphify invocation. Notable SKILL.md changes:
safer AST cache_root (pin to cwd), clearer node ID format docs with
concrete example, new Step 6b Wiki export (opt-in via --wiki),
--update now persists merged extraction back to .graphify_extract.json
so Step 4 sees the full graph.
Co-Authored-By: Claude <noreply@anthropic.com>
Track all gstack-provided skill symlinks (autoplan, browse, qa, etc.)
and the graphify skill. Add .claude/, graphify-out/, .ctx7-cache/ to
gitignore to exclude local/generated files from the repo.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Bastien Chanot